proven.lolhttps://poly.me/williamrowell
HASH b9e5996eaea1825ed5e04707f454b138
This item was proven by @billy on 2023-04-09T00:58:24+00:00. (View all of @billy’s proofs.)
Evidence
This is a copy of the web page retrieved on 2023-04-09T00:58:24+00:00. Show the proof snippet.
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<h2>Want to collaborate?</h2>
<div class="mt-1">Right now, you can get in touch with me for a few things:</div>
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<div class="ml-3">Mentoring</div>
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<div class="ml-3">Open Source Contributions</div>
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<div class="ml-3">Partnering on Side Projects</div>
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<div class="caption-1 text-center text-muted mt-2">+ more</div>
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<h1 id="profile-name">William Rowell</h1>
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<a class="text-muted" data-turbo-frame="modal_container" href="/williamrowell/positions">Senior Staff Scientist, Bioinformatics, Pacific Biosciences</a>
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<span class="ellipsable">Biotechnology</span>
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<span class="ellipsable">Pythonista</span>
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<span class="ellipsable">Bioinformatician</span>
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<span class="ellipsable">Biologist</span>
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<span class="ellipsable">Academic Research</span>
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<span class="ellipsable">Data Science</span>
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<span class="ellipsable">First Generation College Graduate</span>
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<span class="ellipsable">Antiracist</span>
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<span class="ellipsable">Self-Taught</span>
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<span class="ellipsable">Failure</span>
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<span class="ellipsable">Shitposter</span>
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<span class="ellipsable">Cat Dad</span>
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<span class="ellipsable">Bash</span>
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<span class="ellipsable">Dog Dad</span>
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<span data-badges-list-target="overflowBadgeCount">+ 14</span>
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<turbo-frame id="profile_introduction">
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<div class="text-muted text-size-introduction rich-content">
Collaborative biological data scientist with over 20 years of research experience, including 7 years in genomics. Currently focused on variant calling applications and workflows for highly accurate long‐read sequencing data. Practical experience in genomics, human and model organism genetics, neurogenetics, and molecular biology.
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</div>
<div class="text-expander-toggle position-absolute w-100 pointer-cursor text-muted font-weight-medium" data-text-expander-target="expander">
<span>Read more</span>
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<a class="btn btn-block btn-outline-secondary" id="profile-primary-link-27372" target="_blank" rel="nofollow" href="https://proven.lol/87d71c">
<span class="h5 text-default">proof</span>
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</div>
</div>
</div>
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</section>
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<turbo-frame id="collaborate_with_me">
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<div>
<turbo-frame id="collaboration_preferences">
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<div class="d-flex flex-wrap" data-controller="badges-list" data-action="resize@window->badges-list#screenResize" data-badges-list-target="badgesContainer" data-badges-list-max-row-count-value="2" data-badges-list-mobile-max-row-count-value="2" data-badges-list-expanded-value="false" data-badges-list-show-less-value="" data-badges-list-hidden-badge-class="d-none" data-badges-list-overflow-prefix-value="and" data-badges-list-overflow-suffix-value="more." data-badges-list-hide-overflow-count-value="true">
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I'm open to
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<a data-turbo-frame="modal_container" href="https://www.polywork.com/registration/flows/collaboration/75146?entrypoint=%2Fwilliamrowell&opportunity_id=16">
<div data-badges-list-target="badge" class="">
<span class="h2 mr-1 text-default bottom-dashed-border-with-hover-yellow">mentoring,</span>
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</a> <a data-turbo-frame="modal_container" href="https://www.polywork.com/registration/flows/collaboration/75146?entrypoint=%2Fwilliamrowell&opportunity_id=4">
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<span class="h2 mr-1 text-default bottom-dashed-border-with-hover-navy">open source contributions,</span>
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</a> <a data-turbo-frame="modal_container" href="https://www.polywork.com/registration/flows/collaboration/75146?entrypoint=%2Fwilliamrowell&opportunity_id=20">
<div data-badges-list-target="badge" class="">
<span class="h2 mr-1 text-default bottom-dashed-border-with-hover-green">partnering on side projects,</span>
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</a> <a data-turbo-frame="modal_container" href="https://www.polywork.com/registration/flows/collaboration/75146?entrypoint=%2Fwilliamrowell&opportunity_id=162">
<div data-badges-list-target="badge" class="d-none">
<span class="h2 mr-1 text-default bottom-dashed-border-with-hover-blue">giving code reviews,</span>
</div>
</a> <a data-turbo-frame="modal_container" href="https://www.polywork.com/registration/flows/collaboration/75146?entrypoint=%2Fwilliamrowell&opportunity_id=257">
<div data-badges-list-target="badge" class="d-none">
<span class="h2 mr-1 text-default bottom-dashed-border-with-hover-purple">writing blog posts,</span>
</div>
</a> <a data-turbo-frame="modal_container" href="https://www.polywork.com/registration/flows/collaboration/75146?entrypoint=%2Fwilliamrowell&opportunity_id=234">
<div data-badges-list-target="badge" class="d-none">
<span class="h2 mr-1 text-default bottom-dashed-border-with-hover-purple">and proofreading.</span>
</div>
</a>
<div class="" data-badges-list-target="overflowBadge" data-action="click->badges-list#toggleDisplayedBadges">
<span class="h2 text-default bottom-dashed-border-with-hover-primary pointer-cursor" data-badges-list-target="overflowBadgeCount">and more.</span>
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<a class="icon-button" id="social-link-26896" alt="Homepage" target="_blank" data-toggle="tooltip" data-placement="top" data-title="Homepage" rel="nofollow" href="https://wjrowell.info" data-original-title="" title="">
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<div class="text-default t-2" data-test="collections-profile-title">William's Collections</div>
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My 2021 Highlights
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10 Highlights
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Articles and blogs
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18 Highlights
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Videos
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1 Highlight
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<h2 class="ellipsable text-default ">
Speaking engagements
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<div class="caption-2 mt-1 text-muted ">
19 Highlights
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<h2 class="ellipsable text-default ">
Things I’ve built
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<div class="caption-2 mt-1 text-muted ">
2 Highlights
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<a href="https://www.polywork.com/williamrowell/collections/605770" class="link-level-1 link-full" data-turbo-frame="_top" data-test="persisted-collection-card" tabindex="-1"></a>
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Awards
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<div class="col-9 t-2">What William's working on</div>
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<h1 class="text-center">What William's working on</h1>
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<h4 class="d-inline">William Rowell</h4>
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<span class="caption-1 text-nowrap">Started <time title="Dec 19, 2021" data-controller="timeago" data-timeago-datetime-value="2021-12-19T01:27:23Z" data-timeago-abbreviated="false" data-timeago-today-only="false" datetime="2021-12-19T01:27:23Z">over 1 year</time> ago</span>
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<div class="activity-badge-text"><div class="ml-2 ellipsable">Developing automated workflow</div></div>
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Developed an automated workflow for alignment and variant detection of PacBio HiFi WGS using pbmm2, DeepVariant, and WhatsHap.<br><br><a href="https://github.com/williamrowell/hifi-deepvariant-snakemake" target="_blank" rel="noopener,nofollow" class="link-level-3 link-container">williamrowell/hifi-deepvariant-snakemake</a>
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<div class="caption-2 text-muted ml-2">Senior Staff Scientist, Bioinformatics, Pacific Biosciences</div>
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<span class="caption-1 text-nowrap">Started <time title="Dec 19, 2021" data-controller="timeago" data-timeago-datetime-value="2021-12-19T01:24:26Z" data-timeago-abbreviated="false" data-timeago-today-only="false" datetime="2021-12-19T01:24:26Z">over 1 year</time> ago</span>
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<div class="activity-badge-text"><div class="ml-2 ellipsable">Developing automated workflow</div></div>
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Developed an automated workflow for rare variant analysis for PacBio HiFi WGS.<br><br><a href="https://github.com/PacificBiosciences/pb-human-wgs-workflow-snakemake" target="_blank" rel="noopener,nofollow" class="link-level-3 link-container">PacificBiosciences/pb-human-wgs-workflow-snakemake</a>
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<div class="caption-2 text-muted ml-2">Senior Staff Scientist, Bioinformatics, Pacific Biosciences</div>
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<span class="ellipsable caption-2 text-muted">12 highlights</span>
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<h4 class="text-default">Antiracist</h4>
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<h4 class="text-default">Customer Support</h4>
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<span class="ellipsable caption-2 text-muted">0 highlights</span>
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<label class="dropdown-item" role="button" id="highlight-badge-filter-badge-data-engineering">
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<h4 class="text-default">Data Engineering</h4>
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<span class="ellipsable caption-2 text-muted">0 highlights</span>
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<input type="checkbox" name="badges[]" id="filter-badge-259" value="Data Engineering" class="custom-control-input" data-action="change->dropdown-filter#applyFilter">
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<span class="ellipsable caption-2 text-muted">0 highlights</span>
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<input type="checkbox" name="badges[]" id="filter-badge-112" value="Product Research" class="custom-control-input" data-action="change->dropdown-filter#applyFilter">
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<h4 class="text-default">GitHub user</h4>
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<label class="dropdown-item" role="button" id="highlight-badge-filter-badge-failure">
<div class="list-item " id="" data-test="list-item-element">
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<h4 class="text-default">Failure</h4>
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<span class="ellipsable caption-2 text-muted">0 highlights</span>
</div>
<div class="d-inline-flex">
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<input type="checkbox" name="badges[]" id="filter-badge-326" value="Failure" class="custom-control-input" data-action="change->dropdown-filter#applyFilter">
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<label class="dropdown-item" role="button" id="highlight-badge-filter-badge-shitposter">
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<div class="list-item-avatar text-center ">
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<h4 class="text-default">Shitposter</h4>
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<span class="ellipsable caption-2 text-muted">0 highlights</span>
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<h4 class="text-default">Dog Dad</h4>
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Cheung WA, <strong>Rowell WJ</strong>, Farrow EG, Johnson AF, Hall RJ, Cohen ASA, Means J, Zion TN, Portik DM, Saunders CT, Koseva B, Bi C, Schwendinger-Schreck C, Yoo B, Johnston JJ, Gibson M, Thiffault I, Younger ST, Curran T, Wenger AM, Grundberg E, Pastinen T. 2022. Direct haplotype-resolved 5-base HiFi genome sequencing reveals non-coding function of rare disease variants. <em>medRxiv</em> (2022). <a href="https://www.medrxiv.org/content/10.1101/2022.09.12.22279739v1" target="_blank" rel="noopener,nofollow" class="link-level-3 link-container">https://www.medrxiv.org/content/10.1101/2022.09.12.22279739v1</a> [preprint]
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Baid G, Cook DE, Shafin K, Yun T, Llinares-López F, Berthet Q, Belyaeva A, Töpfer A, Wenger AM, <strong>Rowell WJ</strong>, Yang H, Kolesnikov A, Ammar W, Vert J-P, Vaswani A, McLean CY, Nattestad M, Chang P-C, Carroll A. 2022. DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer. <em>Nat Biotechnol</em> (2022). <a href="https://doi.org/10.1038/s41587-022-01435-7" target="_blank" rel="noopener,nofollow" class="link-level-3 link-container">https://doi.org/10.1038/s41587-022-01435-7</a>
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Freed D, <strong>Rowell WJ</strong>, Wenger AM, Li Z. 2022. Sentieon DNAscope LongRead - A highly Accurate, Fast, and Efficient Pipeline for Germline Variant Calling from PacBio HiFi reads. <em>bioRxiv</em>. <a href="https://doi.org/10.1101/2022.06.01.494452" target="_blank" rel="noopener,nofollow" class="link-level-3 link-container">https://doi.org/10.1101/2022.06.01.494452</a> [preprint]
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Wagner J, Olson ND, Harris L, Khan Z, Farek J, Mahmoud M, Stankovic A, Kovacevic V, Yoo B, Miller N, Rosenfeld JA, Ni B, Zarate S, Kirsche M, Aganezov S, Schatz MC, Narzisi G, Byrska-Bishop M, Clarke W, Evani US, Markello C, Shafin K, Zhou X, Sidow A, Bansal V, Ebert P, Marschall T, Lansdorp P, Hanlon V, Mattsson CA, Barrio AM, Fiddes IT, Xiao C, Fungtammasan A, Chin CS, Wenger AM, <strong>Rowell WJ</strong>, Sedlazeck FJ, Carroll A, Salit M, Zook JM. 2022. Benchmarking challenging small variants with linked and long reads. <em>Cell Genomics</em>. <a href="https://doi.org/10.1016/j.xgen.2022.100128" target="_blank" rel="noopener,nofollow" class="link-level-3 link-container">https://doi.org/10.1016/j.xgen.2022.100128</a>
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Mehinovic E, Gray T, Campbell M, Ekholm J, Wenger AM, <strong>Rowell WJ</strong>, Grudo A, Grimwood J, Korlach J, Gurnett C, Constantino JN, Turner TN. 2022. Germline mosaicism of a missense variant in KCNC2 in a multiplex family with autism and epilepsy characterized by long-read sequencing. <em>Am. J. Med. Genet. A</em>. <a href="http://doi.org/10.1002/ajmg.a.62743" target="_blank" rel="noopener,nofollow" class="link-level-3 link-container">http://doi.org/10.1002/ajmg.a.62743</a>
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